Ask Your Question

Bed files for Genome browse

asked 2013-08-16 10:14:42 -0600

Gulhan Ercan gravatar image

I was watching your genome browse webcats. You uploaded bed file to detect the inversion using genome browse. Is this bed file from whole exome seqs or whole genotyping data? Do you have any option to convert bam file to bed file? Thanks

edit retag flag offensive close merge delete

1 answer

Sort by ยป oldest newest most voted

answered 2013-08-19 16:54:06 -0600

Dear Gulhan,

During Bryce's webcast on GenomeBrowse he manually created a BED file to highlight regions of interest in a Whole Genome sample. The inversion was detected and reported by Complete Genomics and Bryce used that information in the BED file to find the same inversion in his data during the webcast.

GenomeBrowse does not have the ability to convert files from one type to another but can only load existing file types for visualization.

Please let me know if you have any further questions.

Thanks, Jami...

edit flag offensive delete link more
Login/Signup to Answer

Questions should be tagged FeatureRequest for asking about a non-existing feature or proposing a new idea, GeneralInquiry for general questions about GenomeBrowse or directions on how to do something, or RanIntoProblem if you want to report an issue or had difficulty getting to an expected result.


Asked: 2013-08-16 10:14:42 -0600

Seen: 8,904 times

Last updated: Aug 19 '13