Ask Your Question

reads fragments

asked 2020-12-07 05:52:25 -0600

Christian Altorfer gravatar image

updated 2020-12-08 03:33:07 -0600


How I can see these fragments/reads from the sequencing? I have 20x sequenced, so there are average 20 reads. But how can see them?

edit retag flag offensive close merge delete

2 answers

Sort by ยป oldest newest most voted

answered 2020-12-08 03:31:59 -0600

Christian Altorfer gravatar image

Only have vcf data.

edit flag offensive delete link more


ok I have found the bam files. It works.

Christian Altorfer ( 2020-12-08 04:15:39 -0600 )edit

answered 2020-12-07 13:33:45 -0600

The BAM plots have two portions. The "Coverage" and "Pile-up". The pile-up will be the read fragments stacked efficiently for your inspection. As you zoom, you can see individual sequence details of your aligned reads.

edit flag offensive delete link more
Login/Signup to Answer

Questions should be tagged FeatureRequest for asking about a non-existing feature or proposing a new idea, GeneralInquiry for general questions about GenomeBrowse or directions on how to do something, or RanIntoProblem if you want to report an issue or had difficulty getting to an expected result.

Question Tools

1 follower


Asked: 2020-12-07 05:52:25 -0600

Seen: 341 times

Last updated: Dec 08 '20