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Hi Vang,

GenomeBrowse is a visualization tool only however this is functionality that is available within our SVS software. Direct filtering from the BED files is not supported but you can create an annotation data source of the regions defined in the BED file and then use our region filter to activate variants in your genotype data.

Once your variant list is down to regions of interest then we have tools available that can provide the statistics you are looking to calculate for each region. I will email you with the specific workflows to get this completed.

Please let us know if you have any further questions.

Thanks, Jami...