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Hi Martin,

For a VCF file to be sorted the variants in the file must be listed one variant per line in ascending genomic order for the species.

Is GenomeBrowse giving an error message when you load the VCF file? Our importer is designed to handle well formed VCF files that are formatted based on specification determined by 1000Genomes.

What species and genome build is the data in the VCF file? Did a particular pipeline or software produce the VCF file?

If you would be willing to share a sample of the VCF data in a secure fashion please email me at genomebrowse@goldenhelix.com and I can provide details to upload the file to our secure server.

Please let me know how I can be of further assistance.

Thanks, Jami...