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Eucalyptus grandis genome

asked 2012-09-27 15:01:54 -0700

Saro Thavamanikumar gravatar image

My genome of interest (Eucalyptus grandis) is not in the list. So, how to add my reference genome (I have a fasta file and a gtf file) locally?

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answered 2012-12-10 16:53:10 -0700

Dear Saro,

I wanted to let you know that we have now made available within GenomeBrowse the Eucalyptus grandis genome. You can download both a reference sequence and a gene track for visualization by going to File > Add; then under the Annotations tab you can select these tracks either for download to your local machine or for direct streaming from the cloud.

We would appreciate any feedback you would be willing to give and please let us know if you have any further questions.

Thanks, Jami...

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answered 2012-09-27 15:02:57 -0700

We are currently working on implementing a tool in GenomeBrowse that would allow the user to add genomes not currently available in the software. Those genomes could come from a variety of file types including FASTA, BED, GFF, UCSC Table Browser data, or VCF.

We are also in a continual process of adding new annotation tracks or various genomes that have been sequenced to GenomeBrowse. We have added Eucalyptus to our list and will notify you when it is completed.

Please see our website at the following link for upcoming features. (http://www.goldenhelix.com/GenomeBrowse/index.html )

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Asked: 2012-09-27 15:01:54 -0700

Seen: 2,997 times

Last updated: Dec 10 '12