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2019-12-18 16:51:54 -0700 commented answer Display phasing in VCFs

Thanks for the quick reply! Is this project open source? If so, I could see trying to contribute this feature myself. If not, please let me know when there is such a capability!

2019-12-18 16:25:34 -0700 asked a question Display phasing in VCFs

Hey there,

When I load a VCF into GenomeBrowser, it nicely displays all my variants for all my samples. However, if I load a VCF with phased haplotypes and Sample1 has genotype 0|1 at Variant1 and 2|0 at Variant2 (a multiallelic variant), then it seems that Sample1 is displayed as 0|1, 0|2 in the browser, not 0|1, 2|0. Is there any option that, for phased VCFs, will force alleles in the same row for a sample to always be of the same haplotype?

Thanks,

Jonathan