Counting sense and anti-sense reads
When I double click on a position, the following statistics shows
Chr2: 230,329,571 Matches / Mismatches / Deletions Type Base Count % of Total Mean Quality (match) A 59 75.6 27.5 (mismatch) T 1 1.3 18.0 (deletion) 18 23.1 ? Total 78 100 27.4
0 alignments filtered out by quality settings.
Chr2 between 230,329,570 and 230,329,571 Insertions Base(s) Count % of Total Mean Quality Non-Insertions 78 100.0 ? Total 78 100 ?
Note: Any alignment spanning or adjacent to the insertion junction that does not have an insertion at the junction is counted as a non-insertion.
is there way to count which reads are on the sense and anti-sense strands?
