Why golden helix browser can not load my bam file of my genome? But I can load my bam file with IGV browser or bam viewer. I also can load the bam file of my mother's genome with golden helix.
Golden Helix says it can not read the bim file. Why?
I can use IGV to see my bam file and I have made a session. I tried to import this session into golden helix, but again golden helix can not read the bim file.
Hi Christian,
I am sorry you are having issues loading your BAM files into GenomeBrowse.
Can you provide a screenshot of the exact error you are receiving when loading your file? GenomeBrowse has some specific requirements that are necessary to visualize BAM data, in particular a matching reference sequence must be identified for coverage to be computed. To match to a reference sequence the chromosome names and lengths must match exactly to what is reported in the header for the BAM file.
Please let me know how I can be of further assistance.
Thanks, Jami...
Questions should be tagged FeatureRequest for asking about a non-existing feature or proposing a new idea, GeneralInquiry for general questions about GenomeBrowse or directions on how to do something, or RanIntoProblem if you want to report an issue or had difficulty getting to an expected result.
Asked: 2016-03-02 10:10:23 -0600
Seen: 301 times
Last updated: Mar 03 '16
