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2013-04-03 11:32:51 -0600 | asked a question | Is there a way to view bases that have been softclipped from reads? I would like to view bases that have been softclipped from reads in the pileup. Ideally, they should be shaded a different color or otherwise visually distinguished from normal bases. Currently I'm using IGV to do this - is there a way to enable this in GenomeBrowse? |