I have downloaded sets of files from MEME online server, showing regulatory regions. I would like to show them in hg19 genome assembly.
Unfortunately GenomeBrowse does not have the functionality to convert GTF format to GFF file format.
However, the Convert Wizard that is available within the software can directly support conversion of the GTF formatted data. The Convert Wizard can be accessed by going to File > Add then clicking Convert in the lower left corner of the Data Source Library. Once the GTF data is converted to TSF (Golden Helix annotation format) then it can be loaded into the GenomeBrowse plot window for visualization.
If you are not looking to visualize the data in GenomeBrowse then there are several third party conversion tools available to get your data in GFF format. Below is one example from the Sequence Ontology group.
Let me know if you have any further questions.
Questions should be tagged FeatureRequest for asking about a non-existing feature or proposing a new idea, GeneralInquiry for general questions about GenomeBrowse or directions on how to do something, or RanIntoProblem if you want to report an issue or had difficulty getting to an expected result.
Asked: 2016-08-07 09:56:40 -0600
Seen: 126 times
Last updated: Aug 08 '16