2014-05-09 09:13:14 -0700
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We have identified a bug in the Windows 64bit version of GenomeBrowse 2.0.1, the issue occurs when trying to create the index (BAI) and coverage (COVTSF) files that are necessary for visualization of BAM data. If you only have your BAM file in the directory you will see an error message "Error reading BAM: Failed bgzf_check_EOF (error code 3)", if you already have a BAI file in addition to your BAM then GenomeBrowse will crash when trying to compute the coverage file.
We are working to fix this issue and should have an update available within the next few weeks. In the meantime you can download the Windows 32bit version of GenomeBrowse to use for computing the index and coverage files.
Please let me know if you have any further issues or any questions.