Ask Your Question
0

Load BAM from URL

asked 2013-10-11 08:09:25 -0600

Kevin Jacobs (2) gravatar image

Can GenomeBrowse load sorted BAM and index files via URL?

edit retag flag offensive close merge delete

6 answers

Sort by ยป oldest newest most voted
0

answered 2014-04-21 11:19:16 -0600

GenomeBrowse 2.0 has been released! You can download the most recent installer from our website.

Included in the new version is the ability to stream BAM files from HTTP and FTP, just click the URL button in the Add dialog. You can find full details in our new GenomeBrowse manual.

edit flag offensive delete link more
0

answered 2014-03-20 13:59:02 -0600

Hi Jo,

This feature is almost finished and is due to be included with the GenomeBrowse 2.0 release which is scheduled for the beginning of April.

We are planning to support remote file (BAM or VCF) loading from both FTP and HTTP protocols, though due to scheduling not all file types or protocols may make it into the initial release.

Please let me know if you have any further questions, I apologize for not answering you sooner.

Thanks, Jami...

edit flag offensive delete link more
0

answered 2014-03-06 10:18:24 -0600

Hi,

There still no upload from URL feature in Genome Browse. Any comment on that?

Thanks,

Go

edit flag offensive delete link more
0

answered 2014-03-06 10:16:52 -0600

this post is marked as community wiki

This post is a wiki. Anyone with karma >75 is welcome to improve it.

Hi Jami,

Any update about the load from URL functionality?

Jo

edit flag offensive delete link more
0

answered 2013-10-31 12:35:04 -0600

Christian Frech gravatar image

This is the only feature that prevents me from using GenomeBrowse right now. Please hurry up :-)

edit flag offensive delete link more
0

answered 2013-10-11 16:35:14 -0600

Hi Kevin,

Thank you for your question! We are currently working on implementing that exact feature in GenomeBrowse and it will be included in the next update release. The next update is scheduled to be released by the end of next month.

Please let us know if you have any further questions.

Thanks, Jami...

edit flag offensive delete link more
Login/Signup to Answer

Questions should be tagged FeatureRequest for asking about a non-existing feature or proposing a new idea, GeneralInquiry for general questions about GenomeBrowse or directions on how to do something, or RanIntoProblem if you want to report an issue or had difficulty getting to an expected result.

Question Tools

Follow
1 follower

Stats

Asked: 2013-10-11 08:09:25 -0600

Seen: 104 times

Last updated: Apr 21 '14