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Hi Jami. I am having the same problem. I think it is because my BAM file has the chromosomes labelled as scaffold1, scaffold2 etc. You guys said you sorted out the problem in the latest release of the software, which is the one I have (1.1.2). So why as I still getting the error (error code 18)? Please help!

Pooja

Hi Jami. I am having the same problem. I think it is because my BAM file has the chromosomes labelled as scaffold1, scaffold2 etc. and so on instead of chr1, chr2...like the reference file from phytozome. You guys said you sorted out the problem in the latest release of the software, which is the one I have (1.1.2). So why as I still getting the error (error code 18)? Please help!

Pooja